2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011

2020

Nomburg J, Bullman S, Chung SS, Togami K, Walker MA, Griffin GK, Morgan EA, LeBoeuf NR, DeCaprio JA, Meyerson M, Lane AA. Comprehensive metagenomic analysis of blastic plasmacytoid dendritic cell neoplasm. Blood Adv. 2020 Mar 24;4(6):1006-1011. doi: 10.1182/bloodadvances.2019001260. Original Article

Haruki K, Kosumi K, Hamada T, Twombly TS, Väyrynen JP, Kim SA, Masugi Y, Qian ZR, Mima K, Baba Y, da Silva A, Borowsky J, Arima K, Fujiyoshi K, Lau MC, Li P, Guo C, Chen Y, Song M, Nowak JA, Nishihara R, Yanaga K, Zhang X, Wu K, Bullman S, Garrett WS, Huttenhower C, Meyerhardt JA, Giannakis M, Chan AT, Fuchs CS, Ogino S. Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer. J Pathol. 2020 Apr;250(4):397-408. doi: 10.1002/path.5381. Original Article 

Serna G, Ruiz-Pace F, Hernando J, Alonso L, Fasani R, Landolfi S, Comas R, Jimenez J, Elez E, Bullman S, Tabernero J, Capdevila J, Dienstmann R, Nuciforo P. Fusobacterium nucleatum Persistence and Risk of Recurrence After Preoperative Treatment in Locally Advanced Rectal Cancer. Annals of Oncology.  vol. 31, no. 10, 2020, pp. 1366-1375. Original Article

La Course KD, Johnston CD, Bullman S. The Relationship Between Gastrointestinal Cancers and the Microbiota. The Lancet Gastroenterology & Hepatology. (Accepted) Review 

2019

Jin C, Lagoudas GK, Zhao C, Bullman S, Bhutkar A, Hu B, Ameh S, Sandel D, Liang XS, Mazzilli S, Whary MT, Meyerson M, Germain R, Blainey PC, Fox JG, Jacks T.  "Commensal Microbiota Promote Lung Cancer Development via γδ T Cells."  Cell. 2019; 176(5):998-1013.e16. PMID:30712876

Haruki K, Kosumi K, Hamada T, Twombly TS, Väyrynen JP, Kim SA, Masugi Y, Qian ZR, Mima K, Baba Y, da Silva A, Borowsky J, Arima K, Fujiyoshi K, Lau MC, Li P, Guo C, Chen Y, Song M, Nowak JA, Nishihara R, Yanaga K, Zhang X, Wu K, Bullman S, Garrett WS, Huttenhower C, Meyerhardt JA, Giannakis M, Chan AT, Fuchs CS, Ogino S. "Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer." J Pathol. 2019 Dec 27. doi: 10.1002/path.5381. [Epub ahead of print]

2018

Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C.  "Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas." Cell reports. 2018; 23(1):194-212.e6. PMCID:PMC6002769

Liu Y, Sethi NS, Hinoue T, Schneider BG, Cherniack AD, Sanchez-Vega F, Seoane JA, Farshidfar F, Bowlby R, Islam M, Kim J, Chatila W, Akbani R, Kanchi RS, Rabkin CS, Willis JE, Wang KK, McCall SJ, Mishra L, Ojesina AI, Bullman S, Pedamallu CS, Lazar AJ, Sakai R, Thorsson V, Bass AJ, Laird PW.  "Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas." Cancer cell. 2018; 33(4):721-735.e8. PMCID:PMC5966039

Bullman S, Zou T, Meyerson M. "Mechanistic Insights into Transmissible Cancers of Mammals." Cancer cell. 2018; 33(4):543-544.  PMID:29634941

Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, Malhotra R, Farshidfar F, Colaprico A, Parker JS, Mose LE, Vo NS, Liu J, Liu Y, Rader J, Dhankani V, Reynolds SM, Bowlby R, Califano A, Cherniack AD, Anastassiou D, Bedognetti D, Rao A, Chen K, Krasnitz A, Hu H, Malta TM, Noushmehr H, Pedamallu CS, Bullman S, Ojesina AI, Lamb A, Zhou W, Shen H, Choueiri TK, Weinstein JN, Guinney J, Saltz J, Holt RA, Rabkin CE, Lazar AJ, Serody JS, Demicco EG, Disis ML, Vincent BG, Shmulevich L. "The Immune Landscape of Cancer."  Immunity. 2018; 48(4):812-830.e14. PMCID:PMC5982584

Liu L, Tabung FK, Zhang X, Nowak JA, Qian ZR, Hamada T, Nevo D, Bullman S, Mima K, Kosumi K, da Silva A, Song M, Cao Y, Twombly TS, Shi Y, Liu H, Gu M, Koh H, Li W, Du C, Chen Y, Li C, Li W, Mehta RS, Wu K, Wang M, Kostic AD, Giannakis M, Garrett WS, Hutthenhower C, Chan AT, Fuchs CS, Nishihara R, Ogino S, Giovannucci EL.  "Diets That Promote Colon Inflammation Associate With Risk of Colorectal Carcinomas That Contain Fusobacterium nucleatum."  Clinical gastroenterology and hepatology: the official clinical practice journal of the American Gastroenterological Association. 2018; 16(10):1622-1631.e3. PMCID:PMC6151288

*Hamada T, Zhang X, Mima K, Bullman S, Sukawa Y, Nowak JA, Kosumi K, Masugi Y, Twombly TS, Cao Y, Song M, Liu L, da Silva A, Shi Y, Gu M, Li W, Koh H, Nosho K, Inamura K, Keum N, Wu K, Meyerhardt JA, Kostic AD, Huttenhower C, Garrett WS, Meyerson M, Giovannucci EL, Chan AT, Fuchs CS, Nishihara R, Giannakis M, Ogino S.  "Fusobacterium nucleatum in Colorectal Cancer Relates to Immune Response Differentially by Tumor Microsatellite Instability Status." Cancer immunology research. 2018; 6(11):1327-1336. PMCID:PMC6215508. Co-first authors   *Authors contributed equally

Kosumi K, Hamada T, Koh H, Borowsky J, Bullman S, Twombly TS, Nevo D, Masugi Y, Liu L, da Silva A, Chen Y, Du C, Gu M, Li C, Li W, Liu H, Shi Y, Mima K, Song M, Nosho K, Nowak JA, Nishihara R, Baba H, Zhang X, Wu K, Wang M, Huttenhower C, Garrett WS, Meyerson ML, Lennerz JK, Giannakis M, Chan AT, Meyerhardt JA, Fuchs CS, Ogino S.  "The Amount of Bifidobacterium Genus in Colorectal Carcinoma Tissue in Relation to Tumor Characteristics and Clinical Outcome."  The American journal of pathology. 2018; 188(12):2839-2852.  PMCID:PMC6284552

Walker MA, Pedamallu CS, Ojesina AI, Bullman S, Sharpe T, Whelan CW, Meyerson M. "GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts."  Bioinformatics (Oxford, England). 2018; 34(24):4287-4289.  PMCID:PMC6289130

2017

"Integrated genomic characterization of oesophageal carcinoma."  Nature. 2017; 541(7636):169-175. PMCID: PMC5651175

Bullman S, Meyerson M, Kostic AD. "Emerging Concepts and Technologies for the Discovery of Microorganisms Involved in Human Disease."  Annual review of pathology. 2017; 12:217-244. PMID:27959634

Mehta RS, Nishihara R, Cao Y, Song M, Mima K, Qian ZR, Nowak JA, Kosumi K, Hamada T, Masugi Y, Bullman S, Drew DA, Kostic AD, Fung TT, Garrett WS, Huttenhower C, Wu K, Meyerhardt JA, Zhang X, Willett WC, Giovannucci EL, Fuchs CS, Chan AT, Ogino S.  "Association of Dietary Patterns With Risk of Colorectal Cancer Subtypes Classified by Fusobacterium nucleatum in Tumor Tissue."  JAMA oncology. 2017; 3(7):921-927. PMCID:PMC5502000

Robertson AG, Kim J, Al-Ahmadie H, Bellmunt J, Guo G, Cherniack AD, Hinoue T, Laird PW, Hoadley KA, Akbani R, Castro MAA, Gibb EA, Kanchi RS, Gordenin DA, Shukla SA, Sanchez-Vega F, Hansel DE, Czerniak BA, Reuter VE, Su X, de Sa Carvalho B, Chagas VS, Mungall KL, Sadeghi S, Pedamallu CS, Lu Y, Klimczak LJ, Zhang J, Choo C, Ojesina AI, Bullman S, Leraas KM, Lichtenberg TM, Wu CJ, Schultz N, Getz G, Meyerson M, Mills GB, McConkey DJ, Weinstein JN, Kwiatkowski DJ, Lerner SP.  "Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer."  Cell. 2017; 171(3):540-556.e25. PMCID:PMC5687509

Bullman S, Pedamallu CS, Sicinska E, Clancy TE, Zhang X, Cai D, Neuberg D, Huang K, Guevara F, Nelson T, Chipashvili O, Hagan T, Walker M, Ramachandran A, Diosdado B, Serna G, Mulet N, Landolfi S, Ramon Y Cajal S, Fasani R, Aguirre AJ, Ng K, Élez E, Ogino S, Tabernero J, Fuchs CS, Hahn WC, Nuciforo P, Meyerson M.  "Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer."  Science (New York, N.Y.). 2017; 358(6369):1443-1448. PMCID:PMC5823247

2016

Pedamallu CS, Bhatt AS, Bullman S, Fowler S, Freeman SS, Durand J, Jung J, Duke F, Manzo V, Cai D, Ananthakrishnan A, Ojesina AI, Ramachandran A, Gevers D, Xavier RJ, Bhan AK, Meyerson M, Yajnik V. "Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn's Disease."  Cellular and molecular gastroenterology and hepatology. 2016; 2(5):563-566.e5. PMCID:PMC5042890

Mima K, Cao Y, Chan AT, Qian ZR, Nowak JA, Masugi Y, Shi Y, Song M, da Silva A, Gu M, Li W, Hamada T, Kosumi K, Hanyuda A, Liu L, Kostic AD, Giannakis M, Bullman S, Brennan CA, Milner DA, Baba H, Garraway LA, Meyerhardt JA, Garrett WS, Huttenhower C, Meyerson M, Giovannucci EL, Fuchs CS, Nishihara R, Ogino S.  "Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location. Clinical and translational gastroenterology." 2016; 7(11): e200.  PMCID:PMC5543402

Mima K, Nishihara R, Qian ZR, Cao Y, Sukawa Y, Nowak JA, Yang J, Dou R, Masugi Y, Song M, Kostic AD, Giannakis M, Bullman S, Milner DA, Baba H, Giovannucci EL, Garraway LA, Freeman GJ, Dranoff G, Garrett WS, Huttenhower C, Meyerson M, Meyerhardt JA, Chan AT, Fuchs CS, Ogino S.  Fusobacterium nucleatum in colorectal carcinoma tissue and patient prognosis.  Gut. 2016; 65(12):1973-1980.  PMCID:PMC4769120

2015

Mima K, Sukawa Y, Nishihara R, Qian ZR, Yamauchi M, Inamura K, Kim SA, Masuda A, Nowak JA, Nosho K, Kostic AD, Giannakis M, Watanabe H, Bullman S, Milner DA, Harris CC, Giovannucci E, Garraway LA, Freeman GJ, Dranoff G, Chan AT, Garrett WS, Huttenhower C, Fuchs CS, Ogino S.  "Fusobacterium nucleatum and T Cells in Colorectal Carcinoma."  JAMA oncology. 2015; 1(5):653-61. PMCID:PMC4537376

2014

O'Doherty A, Koziel M, De Barra L, Corcoran D, Bullman S, Lucey B, Sleator RD.  "Development of nalidixic acid amphotericin B vancomycin (NAV) medium for the isolation of Campylobacter ureolyticus from the stools of patients presenting with acute gastroenteritis."  British journal of biomedical science. 2014; 71(1):6-12.  PMID:24693569

Lucid A, Bullman S, Koziel M, Corcoran GD, Cotter PD, Sleator RD, Lucey B.  "Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate." Genome announcements. 2014; 2(2). PMCID:PMC3983301

Koziel M, Lucid A, Bullman S, Corcoran GD, Lucey B, Sleator RD.  "Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045T, a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus)."  Genome announcements. 2014; 2(2).  PMCID:PMC3990743

Bullman S, Kearney K, O'Mahony M, Kelly L, Whyte P, Fanning S, Morgan JG.  "Identification and genetic characterization of a novel picornavirus from chickens."  The Journal of general virology. 2014; 95(Pt 5):1094-103.  PMID:24496829

2013

Bullman S, Lucid A, Corcoran D, Sleator RD, Lucey B. "Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus."  PloS one. 2013; 8(8):e71515.  PMCID:PMC3758288

2012

Bullman S, Lucey B, Sleator RD.  "Molecular diagnostics: the changing culture of medical microbiology." Bioengineered bugs. 2012; 3(1):1-7.  PMID:22179143

Bullman S, O'Leary J, Corcoran D, Sleator RD, Lucey B.  "Molecular-based detection of non-culturable and emerging campylobacteria in patients presenting with gastroenteritis."  Epidemiology and infection. 2012; 140(4):684-8.  PMID:21676357

Bullman S, Corcoran D, O'Leary J, Byrne D, Lucey B, Sleator RD.  "Epsilonproteobacteria in humans, New Zealand."  Emerging infectious diseases. 2012; 18(10):1709-10; author reply 1710-1.  PMCID:PMC3479867

Koziel M, Lucey B, Bullman S, Corcoran GD, Sleator RD.  "Molecular-based detection of the gastrointestinal pathogen Campylobacter ureolyticus in unpasteurized milk samples from two cattle farms in Ireland."  Gut pathogens. 2012; 4(1):14.  PMCID:PMC3549725

2011

Bullman S, Corcoran D, O'Leary J, Lucey B, Byrne D, Sleator RD. "Campylobacter ureolyticus: an emerging gastrointestinal pathogen?" FEMS immunology and medical microbiology. 2011; 61(2):228-30.  PMID:21320172

Bullman S, Corcoran D, O'Leary J, O'Hare D, Lucey B, Sleator RD.  "Emerging dynamics of human campylobacteriosis in Southern Ireland." FEMS immunology and medical microbiology. 2011; 63(2):248-53. PMID:22077228