SNP-set (Sequence) Kernel Association Test

Documentation for package ‘SKAT’ version 0.82

Close_SSD	Close SNP set data file (SSD)
Generate_SSD_SetID	Generate SNP set data file (SSD)
Get_Genotypes_SSD	Get Genotype data from SSD file
Get_Logistic_Weights	Get the logistic weight
Get_Logistic_Weights_MAF	Get the logistic weight
Get_RequiredSampleSize	Get the required sample size to achieve the given power
Get_Resampling_Pvalue	Compute the resampling p-value
Get_Resampling_Pvalue_1	Compute the resampling p-value
Open_SSD	Open SNP set data file (SSD)
Power_Continuous	Power calculation, continuous traits
Power_Continuous_R	Power calculation, continuous traits
Power_Logistic	Power calculation, Dichotomous traits
Power_Logistic_R	Power calculation, Dichotomous traits
Read_Plink_FAM	Read a Plink FAM file
Resampling_FWER	Return significant SNP sets after controlling family wise error rate (FWER)
Resampling_FWER_1	Return significant SNP sets after controlling family wise error rate (FWER)
SKAT	SNP-set (Sequence) Kernel Association Test
SKAT.example	Example data for SKAT
SKAT.haplotypes	Haplotype dataset for power calculation.
SKAT.SSD.All	SNP-set Kernel Association Test
SKAT.SSD.OneSet	SNP-set (Sequence) Kernel Association Test
SKAT.SSD.OneSet_SetIndex	SNP-set (Sequence) Kernel Association Test
SKAT_Null_Model	Get parameters and residuals from the H0 model
SKAT_Null_Model_MomentAdjust	Get parameters and residuals from the H0 model for small sample adjustment
SSD_FILE_OPEN.FileName	Interval variables for SSD files
SSD_FILE_OPEN.isOpen	Interval variables for SSD files