Selected Publications

The contribution of cell cycle to heterogeneity in single-cell RNA-seq data 
McDavid, A. et al. Nat. Biotechnol. 2016; 34:591–593. PMID: 27281413

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data 
Finak, G. et al. Genome Biol. 2015; 16:278.  PMID: 26653891

COMPASS identifies T-cell subsets correlated with clinical outcomes 
Lin, L. et al.  Nat Biotechnol. 2015; 33:610-616.  PMID: 26006008

Orchestrating high-throughput genomic analysis with Bioconductor 
Huber, W. et al.  Nat Methods. 2015; 12:115-121.  PMID: 25633503

Critical assessment of automated flow cytometry data analysis techniques 
Aghaeepour, N. et al.  Nat. Methods. 2013; 10:228-238.  PMID: 23396282