View a complete list of published work in MyBibliography.


Huang, Y. and Zhou, X. (2020) Identification of the optimal treatment regimen in the presence of missing covariates. Statistics in Medicine, 39(4): 353-368. 

Shen X., Laher F., Moodie Z., McMillan A. S., Spreng R.L., Gilbert P.B., Huang Y., Yates N.L., Grunenberg N., McElrath M. J., Allen M., Pensiero M., Mehra V.L., Van Der Meeren O., Barnett S.W., Phogat S., Gray G.E., Bekker L., Corey L., and Tomaras G.D. (2020) HIV-1 vaccine inserts affect V1V2 antibody responses: a comparison of two poxvirus prime gp120 boost vaccine regimens. Accepted by Scientific Reports. [

Lue Ping Zhao, Andrew Fiore-Gartland, Lindsay N. Carpp, Kristen Cohen, Nadine Rouphael, Llewellyn Fleurs, One Dintwe, Michael Zhao, Zoe Moodie, Youyi Fong, Nigel Garrett, Ying Huang, Craig Innes, Holly E. Janes, Erica Lazarus, Nelson L. Michael, Sorachai Nitayaphan, Punnee Pitisuthithum, Supachai Rerks-Ngarm, Merlin L. Robb, Stephen C De Rosa, Lawrence Corey, Glenda E. Gray, Kelly E. Seaton, Nicole L. Yates, M. Juliana McElrath, Georgia D. Tomaras, Nicole Frahm, Peter B. Gilbert Landscapes of binding antibody and T-cell responses to pox-protein HIV vaccines in Thais and South Africans. (2019) PLOS ONE, 15(1): e00226803.

Huang, Y. and Tarkhan, A. (2020) Methods for feature selection in down-selection of vaccine regimens based on multivariate immune response endpoints. Statistics in Bioscience, In Press. 

110. Ross L Prentice, Mary Pettinger, Marian L Neuhouser, Lesley F Tinker, Ying Huang, Cheng Zheng, JoAnn E Manson, Yasmin Mossavar-Rahmani, Garnet L Anderson, Johanna W Lampe (2020) Can dietary self-reports usefully complement blood concentrations for estimation of micronutrient intake and chronic disease associations? Accepted by American Journal of Clinical Nutrition.[original work]

Ying Liu, Sukwinder Kaur, Ying Huang, Johannes F. Fahrmann, Samir Hanash, Surinder Batra, Aatur D. Singhi, Randall E. Brand, Anirban Maitra, and Brian B. Haab. (2020) Biomarkers strategy to detect pre-invasive pancreatic cancer: state of the field and the impact of the EDRN. Accepted by Cancer Epidemiology, Biomarkers & Prevention.

Zhuang, Y., Huang, Y., and Gilbert, P. B. (2020) Evaluation of treatment effect modification by biomarkers measured pre- and post-randomization in the presence of non-monotone missingness. Accepted by Biostatistics

Chong-Feng Gao, Luke Wisniewski , Ying Liu , Ben Staal , Ian Beddows, Dennis Plenker , Mohammed Aldakkak , Johnathan Hall, Daniel Barnett , Mirna Kheir Gouda , Peter J. Allen, Richard R. Drake, Amer H. Zureikat , Ying Huang, Douglas B. Evans , Aatur D. Singhi , Randall E. Brand , David A. Tuveson, Susan Tsai, and Brian B. Haab (2020) Detection of a Chemotherapy-Resistant and Low-Glycolytic Subtype of Pancreatic Cancer Using a Blood Test. Accepted by Clinical Cancer Research.


Prentice RL, Pettinger M, Neuhouse ML, Tinker LF, Huang Y, Zheng C, Manson JE, Mossavar-Rahmani Y, Anderson GL, Lampe JW. Application of blood concentration biomarkers in nutritional epidemiology: example of carotenoid and tocopherol intake in relation to chronic disease risk. American Journal of Clinical Nutrition (2019), 109(4): 1189-1196. 

Staal B, Liu Y, Barnett D. Hsueh P, He Z, Gao C, Partyka K, Hurd MW, Singhi AD, Drake RR, Huang Y, Maitra A, Brand RE, Haab BB. The sTRA plasma biomarker: blinded validation of improved accuracy over CA19-9 in pancreatic cancer diagnosis. Cancer Clinical Research (2019), 25(9): 2745-2754. 

Wang L, Luedtke AR, Huang Y. Assessing the incremental value of new biomarkers based on OR rules (2019) Biostatistics,21(3): 594-609. 

Spearman, P,  Tomaras, GD,  Montefiori, DC,  Huang, Y,  Elizaga, ML, Ferrari, G,  Alam, SM, Isaacs, A,  Ahmed, H,  Hural, J,  McElrath, MJ, Ouedraogo, L,  Pensiero, M,  Butler, C,  Kalams, SA,  Overton, ET, and Barnett, SW on behalf of the HVTN 088 Protocol Team and the NIH/NIAID HIV Vaccine Trials Network. Rapid boosting of HIV-1 neutralizing antibody responses in humans following a prolonged immunologic rest. Journal of Infectious Diseases (2019), 219(11): 1755-1765. 

Gilbert, P. B#., Huang, Y.#, Juraska, M., Moodie, Z., Fong, Y., Luedtke A., Zhuang, Y., Shao, J., Carpp, L. N., Jackson, N., Chambonneau, L., Bouckenooghe, A., Zambrano, B., Frago, C., Pallardy, S., and Noriega, F. Bridging efficacy of a tetravalent dengue vaccine from children/adolescents to adults in high endemic countries based on neutralizing antibody response. American Journal of Tropical Medicine and Hygiene (2019), 101(1): 164-179. #equal contribution.

Huang, Y., and Dasgupta, S. (2019) Likelihood-based methods for assessing principal surrogate endpoints in vaccine trials. Statistics in Bioscience (2019), 11(3), 504-523.  

Zhuang, Y., Huang, Y., and Gilbert, P. B. (2019) Simultaneous Inference of Treatment Effect Modification by Intermediate Response Endpoint Principal Strata with Application to Vaccine Trials. International Journal of Biostatistics, 16(1). 

Wang L., Huang, Y. and Feng Z. (2019) Strategies for validating biomarkers using data from a reference set. Accepted by Biostatistics

Amarendra Pegu, Bhavesh Borate, Yunda Huang, Matthias G. Pauthner, Ann J. Hessell, Boris Julg, Nicole Doria-Rose, Stephen D. Schmidt, Lindsay N. Carpp, Dan H. Barouch, Nancy Haigwood, Lawrence Corey, Dennis R. Burton, Mario Roederer, Peter B. Gilbert, John R. Mascola, Ying Huang. A meta-analysis of passive immunization studies with HIV antibodies shows an association of serum neutralizing antibody titer with protection against SHIV challenge in nonhuman primates. Cell Host & Microbe (2019), 26(3): 336-346.

Gray, G. E., Huang, Y.,  Grunenberg, N., Laher, F., Roux, S.,  Anderson-Nissen, E., De Rosa, S. C., Flach, B., Jensen, R. L.,  Swann, E. M., Innes, C.,  Lazarus, E., Morris, L., Mkhize, N. N., Ferrari, G. Montefiori, D. C., Hural, J., Isaacs, A., Phogat, S., DiazGranados, C. A., Lee, C.,  Sinangil, F., Michael, N. L., Robb, M. L., Kublin, J. G., Gilbert, P. B.,  McElrath, M. J.,  Tomaras, G. D.,  Corey, L. Immune responses to the RV144 vaccine regimen in South Africa: Defining potential immune correlates of ALVAC-HIV and AIDSVAX® B/E in a Clade C epidemic. Scientific Translational Medicine (2019), 11(510), pii: eaax1880. 


Huang, Y*. (2018) Evaluating principal surrogate markers in vaccine trials in the presence of multiphase sampling. Biometrics, 74(1): 27-39. PMCID: PMC5743779.

Zhu, K., Huang, Y., Zhou, X. (2018) Tree-based ensemble methods for individualized treatment rules. Biostatistics and Epidemiology, 2(1): 61-83.

Prentice, R. and Huang Y. (2018) Nutritional epidemiology methods and related statistical challenges and opportunities. Statistical Theory and Related Fields, Accepted.

Prentice, R. and Huang Y. (2018) Response to discussion of ‘Nutritional epidemiology methods and related statistical challenges and opportunities’. Statistical Theory and Related Fields, Accepted.

Wang, L. and Huang, Y.* (2018) Evaluating classification performance of biomarkers in two-phase case-control studies. Statistics in Medicine, Accepted.

Lo, M., Zhu, J., Hansen, S., Carroll, T., Zuend, C. F., Noel-Romas, L., Ma, Z., Fritts, L., Huang, M., Sun, S., Huang, Y., Koelle, D., Picker, Burgener, A., L., Corey, L., and Miller, C. (2019) Acute infection and subsequent subclinical reactivation of herpes simplex virus-2 after vaginal inoculation of rhesus macaques. Journal of Virology, 93(2). Pii:e01574-18. PMCID: PMC6321901.

Fong, Y., Huang, Y., Lemos, M. P., and McElrath, J. (2018) Response to Guo et al.’s Letter to the Editor. Submitted to Biostatistics, Accepted.

Wang, L., Luedtke, A. R. and Huang, Y.*, and (2018) Assessing the incremental value of new biomarkers based on OR rules. Biostatistics, Accepted.

Juraska, M., Huang, Y., and Gilbert, P. B. (2018)  Inference on treatment effect modification by marker response in a baseline surrogate measure three-phase sampling design. Biostatistics, Accepted.

Prentice, R. L., Pettinger, M., Neuhouser, M. L., Tinker, L. F., Huang, Y., Zheng, C., Manson, J. E., Mossavar-Rahmani, Y., Anderson, G. L., and Lampe, J. W. (2018) Application of blood concentration biomarkers in nutritional epidemiology: example of carotenoid and tocopherol intake in relation to chronic disease risk. American Journal of Clinical Nutrition, In Press.

Staal, B., Liu, Y., Barnett, D., Hsueh, P., He, Z., Gao, C., Partyka, K., Hurd, M. W., Singhi, A. D., Drake, R. R., Huang, Y., Maitra, A., Brand, R. E., Haab, B. B. (2018) Improved acuracy over CA19-9 in pancreatic cancer diagnosis. Cancer Clinical Research. In Press.


Huang, Y.*,Gilbert, P.B., Fu, R., and Janes, H. (2017) Statistical methods for down-selection of treatment regimens based on multiple endpoints, with application to HIV vaccine trials. Biostatistics, 18(2): 230-243. PMCID: PMC6092735.

Fong, Y., Di, C., Huang, Y., and Gilbert, P. (2017) Model-robust inference for continuous threshold regression models. Biometrics, 73(2): 452-462. PMCID: PMC5435560.

Lampe, J. W., Huang, Y., Neuhouser, M. L., Tinker, L. F., Song, X., Schoeller, D. A., Kim, S., Raftery, M. D., Di, C., Zheng, C., Schwarz, Y., Van Horn, L., Thomson, C. A., Mossavar-Rahmani, Y., Beresford, S. A. A., and Prentice, R. L. (2017) Dietary biomarker evaluation in a controlled feeding study in women from the Women’s Health Initiative Cohort. American Journal of Clinical Nutrition, 105(2): 466-475. PMCID: PMC5267309.

Balasenthil, S., Huang, Y., Suyu Liu, Marsh, T., Chen, J.,  Stass, S., KuKuruga, D., Brand, R., Chen, N., Frazier, M. L., Lee, J., Srivastava, S., Sen, S., and Killary, A. M. (2017) A plasma biomarker panel to identify surgically resectable early stage pancreatic cancer. Journal of National Cancer Institute, 109(8). PMID: 28376184.

Kim, S. and Huang, Y.* (2017) Combining biomarkers for classification with covariate adjustment. Statistics in Medicine, 10; 36(15): 2347-2362. PMCID: PMC5459674.

Song, X., Huang, Y., Neuhouser, M. L., Tinker, L. F., Vitolins, M. Z., Prentice, R. L., and Lampe, J. W. (2017) Dietary long-chain fatty acids and carbohydrate biomarkers evaluation in a controlled feeding study in participants from the Women’s Healthy Initiative cohort. American Journal of Clinical Nutrition, 105(6): 1272-1282. PMCID: PMC5445682.

Prentice, R. L., Huang, Y. , Neuhouse, M. L., Manson, J. E., Mossavar-Rahmani, Y., Thomas, F., Tinker, L. F., Allison, M., Johnson, K. C., Wssertheil-Smoller, S., Seth, A., Rossouw, J. E., Shikany, J., Crbone, L. D., Martin, L. W., Stefanick, M., Haring, B., and Van Horn, L. (2017) Associations of biomarker-calibrated sodium and potassium intakes with cardiovascular disease risk among postmenopausal women. American Journal of Epidemiology, 186(9): 1035-1043. PMCID: PMC5860327.

Prentice, R. L., Huang, Y., Neuhouser, M. L., Tinker, L. F., and Van Horn, L. (2017) Response to invitation to submit a reply to Commentary AJE-00463-2017- Can estimation of sodium intake be improved by borrowing information from other variables? American Journal of Epidemiology, 186(9): 1047-1048. PMCID: PMC5860496.

Barnett, D., Liu, Y., Partyka, K., Huang, Y., Tang, H., Hostetter, G., Brand, R. E., Singhi, A. D., Drake, R. R., and Haab, B. B. (2017) The CA19-9 and Sialyl-TRA antigens define separate supbpopulations of pancreatic cancer cells. Scientific Reports, 7(1): 4020. PMCID: PMC5481434.

Andrew J. Spieker, and Ying Huang* (2017) A method to address between-subject heterogeneity for identification of principal surrogate markers in repeated low-dose challenge HIV vaccine studies. Statistics in Medicine, 10; 36(25): 4071-4080. PMCID: PMC5669638.

Fong, Y, and Huang, Y. (2017) Modified Wilcoxon-Mann-Whitney test and power against strong null. The American Statistician, In Press.

Fong, Y., Huang, Y., Lemos, M. P., and McElrath, J. (2017) Rank-based two-sample tests for partially paired data. Biostatistics, 18(1): 454.

Fong, Y., Huang, Y., Gilbert, P., and Permar, S. (2017) chngpt: threshold regression model estimation and inference. BMC Bioinformatics, 18(1): 454. PMCID: PMC5644082.

Moodie, Z., Juraska, M., Huang, Y., Zhuang, Y., Fong, Y., Self, S. G., Chambonneau, L., Small, R., Jackson, N., Noriega, F., and Gilbert, B. (2017) Neutralizing antibody correlates analysis of tetravalent dengue vaccine efficacy trials in Asia and Latin America. The Journal of Infectious Diseases, 217(5): 742-753. PMCID: PMC5854020.


Huang, Y.* (2016) Evaluating and comparing diagnostic markers with respect to the area under the receiver operating characteristic curve in two-phase case-control studies. Biostatistics, 17(3): 499-522. PMCID: PMC4915610

Ying Huang*, Carlos DiazGrandos, Holly Janes, Yunda Huang, Allan deCamp, Barb Metch, Shannon Grant, Brittany Sanchez, Sanjay Phogat, Georiga D. Tomaras, Julie McElrath, James Kublin, Lawrence Corey, Peter B. Gilbert* (2016) Selection of HIV vaccine candidates for concurrent testing in an efficacy trial, Current Opinion in Virology, 17: 57-65. PMC4902743.

Laura Carbone, Karen Johnson, Ying Huang, Mary Pettinger, Fridjtof Thomas, Jane Cauley, Carolyn Crandall, Lesley Tinker, Meryl Susan LeBoff, Jean Wactawsk-Wende, Monique Bethel, Wenjun Li, and Ross Prentice. (2016) Sodium intake and osteoporosis. Findings from the Women’s Health Initiative. The Journal of Clinical Endocrinology & Metabolism, 101(4): 1414-1421. PMCID: PMC4880174.

Gilbert, P. and Huang, Y. (2016) Predicting overall vaccine efficacy in a new setting by re-calibrating baseline covariate and intermediate response endpoint effect modifiers of type-specific vaccine efficacy. Epidemiologic Methods, In Press.

Fong, Y, Yin, S, and Huang, Y* (2016) Combining biomarkers nonlinearly for classification using the area under the ROC curve. Statistics in Medicine, 35(21): 3792-3809. PMCID: PMC4965290.

Huang, Y., Gilbert, P.B., Fu, R., and Janes, H. (2015) Statistical methods for down-selection of treatment regimens based on multiple endpoints, with application to HIV vaccine trials. Biostatistics, In Press.


Huang, Y.*, Laber, E., Janes, H. (2015) Characterizing expected benefits of biomarkers in treatment selection. Biostatistics, 16(2): 383-99. PubMed Journal – In Process. PMID: 25190512.

Kang, C., Huang, Y.*, and Miller, C. (2015) A discrete time-survival model with random effects for designing and analyzing repeated low-dose challenge experiments. Biostatistics, 16(2):295-310. PMCID: PMC4786638.

Tang, H., Singh, S., Partyka, K., Kletter, D., Hsueh, P., Yadav, J., Ensink, E., Bern, M., Hostetter, G., Hartman, D., Huang, Y., Brand, R., Haab, B. (2015) Glycan motif profiling reveals plasma sialyl-Lewis X elevations in pancreatic cancers that are negative for Sialyl-Lewis A. Molecular and Cellular Proteomics, 14(5):1323-33. PMCID: PMC4424402.

Gilbert, P.B., Gabriel, E.E., Huang, Y., and Chan, I.S.F. (2015) Surrogate endpoint evaluation: principal surrogate criteria and the Prentice definition. Journal of Causal Inference, 3(2): 157-175. PMDID: PMC4692254.

Huang, Y. *(2015) Identifying optimal biomarker combinations for treatment selection through randomized controlled trials. Clinical Trials, 12(4): 348-356.

Yunda Huang, Dean Follmann, Martha Nason, Lily Zhang, Ying Huang, Devan V. Mehrotra, Zoe Moodie, Barbara Metch, Holly Janes, Michael C. Keefer, Gavin Churchyard, Merlin L. Robb, Patricia E. Fast, Ann Duerr, M. Juliana McElrath, Lawrence Corey, John R. Mascola, Barney S. Graham, Magdalena E. Sobieszczyk, James G. Kublin, Michael Robertson, Scott M. Hammer, Glenda Gray, Susan P. Buchbinder, Peter B. Gilbert. (2015) Effect of rAd5-vector HIV-1 preventive vaccines on HIV-1 acquisition: a peerticipant-level meta-analysis of randomized trials. PLOS ONE, 10(9), e0136626. PMCID: PMC4558095.

Haab, B.B., Huang, Y., Balasenthil, S., Partyka, K., Tang, H., Anderson, M., Allen, P., Sasson, A., Zeh, H., Kaul, K., Kletter, D., Ge, S., Bern, M., Srivastava, S., Fraizer, M.L., Sen, S., Hollingsworth, M.A., Jarnagin, W., Kwon, R., Rinaudo, J.A., Killary, A.M., and Brand, R.E. (2015) Definitive characterization of CA 19-9 in resectable pancreatic cancer using a reference set of serum and plasma specimens. PLOS ONE, 10(10): e0139049.

Honda, K., Kobayashi, M., Okusaka, T., Rinaudo, J. , Huang, Y., Marsh, T., Sanada, M., Sasajima, Y., Nakamori, S., Shimahara, M., Ueno, T., Tsuchida, A., Sata, N., Loka, T., Yasunami, Y., Kosuge, T., Miura, N., Kamita, M., Sakamoto, T., Shouji, H., Jung, G., Srivastava, S., Yamada, T. (2015) Plasma biomarker for detection of early stage pancreatic cancer and risk factors for pancreatic malignancy using antibodies for apolipoprotein-All isoforms. Scientific Reports, In Press.

Helen Storey, Ying Huang, Chris Crudder, Allison Golden, Tala de los Santos, and Kenneth Hawkins. (2015) A Meta-analysis of typhoid diagnostic accuracy studies: a recommendation to adopt a standardized composite reference. PLoS ONE, 10(11): e0142364.

Tang, H., Partyka, K., Hsueh, P., Sinha, J. Y., Kletter, D., Zeh, H., Huang, Y., Brand, R.E., and Haab, B.B. (2015) Glycans related to the CA19-9 antigen are increased in distinct subsets of pancreatic cancers and improve diagnostic accuracy over CA19-9. Cellular and Molecular Gastroenterology and Hepatology, 2(2): 210-221.


Janes, H., Pepe, M.S., and Huang, Y. (2014) A framework for evaluating markers used to select patient treatment. Medical Decision Making, 34(2):159-67. PMCID: PMC3818438.

Huang, Y., Van Horn, L., Tinker, L. F., Neuhouser, M. L., Carbone, L., Mossavar-Rahmani, Y., Thomas, F., and Prentice, R. L. (2014) Measurement error corrected sodium and potassium intake estimation using 24-hour urinary excretion. Hypertension, 63(2):238-44. PMCID: PMC4070598.

Beasley, J. M., LaCroix, A. Z., Larson, J., Huang, Y., Neuhouser, M. L., Tinker, L. F., Jackson, R., Snetselaar, L., Johnson, K., Eaton, C., Prentice, R. L. (2014) Biomarker-calibrated protein intake and bone health in the Women’s Health Initiative clinical trial and observational study. American Journal of Clinical Nutrition, 99(4):934-40. PMCID: PMC3953886.

Janes, H., Brown, M.D., Huang, Y., Pepe, M.S. (2014) An approach to evaluating and comparing biomarkers for patient treatment selection. International Journal of Biostatistics, 10(1): 99-121. PMCID: PMC4341986.

Kang, C., Janes, H., and Huang, Y. (2014) Combining biomarkers to optimize patient treatment recommendations. Biometrics, 70(3): 695-707. PMCID: PMC4248022.

Nolen, B. M., Brand, R. E., Prosser, D., Velikokhatnaya, L., Allen, P. J., Zeh, H. J., Grizzle, W. E., Huang, Y. , Lomakin, A., and Lokshin, A. E. (2014) Prediagnostic serum biomarkers as early detection tools for pancreatic cancer in a large prospective cohort study. PLoS One, 9(4):e94928. PMCID: PMC3991628.

Kang, C., Janes, H., and Huang, Y. (2014) Rejoinder: Combining biomarkeers to optimize patient treatment recommendations. Biometrics, 70(3): 719-720. PMCID: PMC4247994.

Huang, Y*. and Fong, Y. (2014) Identifying optimal biomarker combinations for treatment selection via a robust kernel method. Biometrics, 70(4): 891-901. PMCID:PMC4277554.

Gray, G.E., Andersen-Nissen, E., Grunenberg, N., Huang, Y., Roux, S., Laher, F., Innes, C., Gu, N., DiazGranados, C., Phogat, S., Lee, C., Swann, E., Kim, J., O’Connell, R., Michael, N., Flach, B., DeRosa, S., Frahm, N., Morris, L., Montefiori, D., Gilbert, P., Tomaras, G., McElrath, J., Corey, L. (2014) HVTN 097: Evaluation of the RV144 vaccine regimen in HIV uninfected South Africa adults. AIDS Research and Human Retroviruses, 30, Suppl 1: A33-4.

Huang, Y.*, and Laber, E. (2014) Personalized evaluation of biomarker value: a cost-benefit perspective. Statistics in Biosciences, 8: 43-65. PMCID:PMC4938856.


Duerr A, Huang Y, Buchbinder S, Coombs RW, Sanchez J, Del Rio C, Casapia M, Santiago S, Huang Y, Gilbert P, Corey L, Robertson MN. (2013) Reply to Richie and Villasante. J Infect Dis; 207(4): 690-692.

Feng, Z, Kagan, J, Pepe, MS, Wagner, P, Thornquist, M, Rinaudo, JA, Krueger, K, Zheng, Y, Patriotis, C, Huang, Y, Thompson, I, and Srivastava, S (2013) EDRN specimen reference sets: paving the way for rapid evaluation of potential biomarkers. Journal of Clinical Chemistry, 59(1): 68-74. PMCID: PMC3652317.

Huang, Y*, Gilbert, PB, Wolfson, J. (2013) Design and estimation for evaluating principal surrogate markers in vaccine trials. Biometrics, 69(2):301-9. PMCID: PMC3713795.

Huang, Y*, Pepe, MS, and Feng, Z (2013) Logistic regression analysis with standardized markers. Annals of Applied Statistics, 7(3): 1640-1662. PMCID: PMC3817965.

Mossavar-Rahmani Y, Tinker LF, Huang, Y, Neuhouser, ML, McCann, SE, Seguin, RA, Vitolins, MZ, Curb, JD, Prentice, RL (2013) Psychosocial & diet behavior factors in dietary assessment: biomarkers and self-report in the Women’s Health Initiative Observational Study. Nutrition Journal, 12(63). PMCID: PMC3658913.

Prentice, R. L., Tinker, L. F., Huang, Y. , and Neuhouser, M. L. (2013) Calibration of self-reported dietary measures using biomarkers: an approach to enhancing nutritional epidemiology reliability. Current Atherosclerosis Reports, 15:353. PMCID: PMC3832356.

Prentice, RL, Pettinger, M, Tinker, LF, Huang, Y, Thomson, C, Johnson, K, Beasley, J, Anderson, G, Manson, J, Shikany JM, Chlebowski, RT, and Neuhouser, ML (2013) Regression calibration in nutritional epidemiology: example of fat density and total energy in relationship to postmenopausal breast cancer. American Journal of Epidemiology, 178(11): 1663-72. PMCID: PMC3842904.

Prentice, R. L., Neuhouser, M. L., Tinker, L. F., Pettinger, M., Thomson, C. A., Mossavar-Rahmani, Y. M., Thomas, F., Qi, L., Huang, Y. (2013) An exploratory study of respiratory quotient calibration and association with postmenopausal breast cancer. Cancer Epidemiology, Biomarker & Prevention, 22(12): 2374-83. PMCID: PMC3864792.


Huang, Y, Gilbert PB, Janes H. 2012. Assessing Treatment-Selection Markers using a Potential Outcomes Framework.. Biometrics. 68(3):687-696.

Bonsignori, M, Pollara J, Moody AM, Alpert MD, Chen X, Hwang K-K, Gilbert PB, Huang Y, Gurley TC,Kozink DM et al.. 2012. Antibody-Dependent Cellular Cytotoxicity-Mediating Antibodies from an HIV-1 Vaccine Efficacy Trial Target Multiple Epitopes and Preferentially Use the VH1 Gene Family..Journal of virology. 86(21):11521-32.

Dai, JY, Logsdon BA, Huang Y, Hsu L, Reiner AP, Prentice RL, Kooperberg C. 2012. Simultaneously testing for marginal genetic association and gene-environment interaction.. American journal of epidemiology. 176(2):164-73.

Huang, Y, Ballinger DG, Stokowski R, Beilharz E, Robinson JG, Liu S, Robinson R, Henderson VW, Rossouw JE, Prentice RL. 2012. Exploring the interaction between SNP genotype and postmenopausal hormone therapy effects on stroke risk.. Genome medicine. 4(7):57. 

Qureshi, H, Ma Z-M, Huang Y, Hodge G, Thomas MA, Dipasquale J, Desilva V, Fritts L, Bett AJ, Casimiro DR et al.. 2012. Low-Dose Penile SIVmac251 Exposure of Rhesus Macaques Infected with Adenovirus Type 5 (Ad5) and Then Immunized with a Replication-Defective Ad5-Based SIV gag/pol/nef Vaccine Recapitulates the Results of the Phase IIb Step Trial of a Similar HIV-1 Vaccine..Journal of virology. 86(4):2239-50. 

Huang, Y, Huang Y, Moodie Z, Li S, Self SG. 2012. Comparing and combining data across multiple sources via integration of paired-sample data to correct for measurement error.. Statistics in medicine. 31(28):3748-59. 

Pepe, MS, Fan J, Seymour CW, Li C, Huang Y, Feng Z. 2012. Biases introduced by choosing controls to match risk factors of cases in biomarker research.. Clinical chemistry. 58(8):1242-51. 

Montefiori, DC, Karnasuta C, Huang Y, Ahmed H, Gilbert P, de Souza MS, McLinden R, Tovanabutra S,Laurence-Chenine A, Sanders-Buell E et al.. 2012. Magnitude and Breadth of the Neutralizing Antibody Response in the RV144 and Vax003 HIV-1 Vaccine Efficacy Trials.. The Journal of infectious diseases. 206(3):431-41. 

Gilbert, PB, Grove D, Gabriel E, Huang Y, Gray G, Hammer SM, Buchbinder SP, Kublin J, Corey L, Self SG. 2012. A Sequential Phase 2b Trial Design for Evaluating Vaccine Efficacy and Immune Correlates for Multiple HIV Vaccine Regimens. Statistical Communications in Infectious Diseases. 3(1)


Prentice, RL, Mossavar-Rahmani Y, Huang Y, Horn LV, Beresford SAA, Caan B, Tinker L, Schoeller D,Bingham S, Eaton CB et al.. 2011. Evaluation and comparison of food records, recalls, and frequencies for energy and protein assessment by using recovery biomarkers.. American journal of epidemiology. 174(5):591-603. 

Huang, Y, Fong Y, Wei J, Feng Z. 2011. Borrowing Information across Populations in Estimating Positive and Negative Predictive Values.. Journal of the Royal Statistical Society. Series C, Applied statistics. 60(5):633-653. 

Huang, Y, Isharwal S, Haese A, Chun FKH, Makarov DV, Feng Z, Han M, Humphreys E, Epstein JI, Partin AW et al.. 2011. Prediction of patient-specific risk and percentile cohort risk of pathological stage outcome using continuous prostate-specific antigen measurement, clinical stage and biopsy Gleason score.. BJU international. 107(10):1562-9. 

Prentice, RL, Huang Y, Kuller LH, Tinker LF, Horn LV, Stefanick ML, Sarto G, Ockene J, Johnson KC. 2011. Biomarker-calibrated energy and protein consumption and cardiovascular disease risk among postmenopausal women.. Epidemiology (Cambridge, Mass.). 22(2):170-9. 

Huang, Y, Ballinger DG, Dai JY, Peters U, Hinds DA, Cox DR, Beilharz E, Chlebowski RT, Rossouw JE,McTiernan A et al.. 2011. Genetic variants in the MRPS30 region and postmenopausal breast cancer risk.. Genome medicine. 3(6):42. 

Tinker, LF, Sarto GE, Howard BV, Huang Y, Neuhouser ML, Mossavar-Rahmani Y, Beasley JM, Margolis KL, Eaton CB, Phillips LS et al.. 2011. Biomarker-calibrated dietary energy and protein intake associations with diabetes risk among postmenopausal women from the Women's Health Initiative..The American journal of clinical nutrition. 94(6):1600-6. 

Huang, Y, Gilbert PB. 2011. Comparing biomarkers as principal surrogate endpoints.. Biometrics. 67(4):1442-51.

Pollara, J, Hart L, Brewer F, Pickeral J, Packard BZ, Hoxie JA, Komoriya A, Ochsenbauer C, Kappes JC,Roederer M et al.. 2011. High-throughput quantitative analysis of HIV-1 and SIV-specific ADCC-mediating antibody responses.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 79(8):603-12. 


Huang, Y, Hinds DA, Qi L, Prentice RL. 2010. Pooled versus individual genotyping in a breast cancer genome-wide association study.. Genetic epidemiology. 34(6):603-12.

Huang, Y, Pepe MS. 2010. Assessing risk prediction models in case-control studies using semiparametric and nonparametric methods.. Statistics in medicine. 29(13):1391-410. 

Beasley, JM, LaCroix AZ, Neuhouser ML, Huang Y, Tinker L, Woods N, Michael Y, Curb DJ, Prentice RL. 2010. Protein intake and incident frailty in the Women's Health Initiative observational study..Journal of the American Geriatrics Society. 58(6):1063-71. 

Prentice, RL, Huang Y, Hinds DA, Peters U, Cox DR, Beilharz E, Chlebowski RT, Rossouw JE, Caan B,Ballinger DG. 2010. Variation in the FGFR2 gene and the effect of a low-fat dietary pattern on invasive breast cancer.. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 19(1):74-9.


Prentice, RL, Huang Y, Hinds DA, Peters U, Pettinger M, Cox DR, Beilharz E, Chlebowski RT, Rossouw JE,Caan B et al.. 2009. Variation in the FGFR2 gene and the effects of postmenopausal hormone therapy on invasive breast cancer.. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 18(11):3079-85. 

Prentice, RL, Huang Y, Tinker LF, Beresford SAA, Lampe JW, Neuhouser ML. 2009. Statistical Aspects of the Use of Biomarkers in Nutritional Epidemiology Research.. Statistics in biosciences. 1(1):112-123.

Huang, Y, Pepe MS. 2009. Biomarker evaluation and comparison using the controls as a reference population.. Biostatistics (Oxford, England). 10(2):228-44. 


Puschel, K, Thompson B, Coronado G, Huang Y, Gonzalez L, Rivera S. 2008. Effectiveness of a brief intervention based on the '5A' model for smoking cessation at the primary care level in Santiago, Chile.. Health promotion international. 23(3):240-50.

Pepe, MS, Zheng Y, Jin Y, Huang Y, Parikh CR, Levy WC. 2008. Evaluating the ROC performance of markers for future events.. Lifetime data analysis. 14(1):86-113. 

Pepe, MS, Feng Z, Huang Y, Longton G, Prentice RL, Thompson IM, Zheng Y. 2008. Integrating the predictiveness of a marker with its performance as a classifier.. American journal of epidemiology. 167(3):362-8.