Harmony: Harmonize single-cell data measured at discrete time points.
Link | Reference

Palantir: Single-cell trajectory detection algorithm to model continuities in cell-state transitions and cell-fate choices.
Link | Reference

Wishone: Single-cell trajectory detection algorithm to model bifurcating trajectories.
Link | Reference 

SeqGL: De-novo motif discovery algorithm using k-mer models.
Link | Reference 

RegulatorInference: Regression models for identifying dysregulated regulators in disease.
Link | Reference


Single-cell RNA-seq landscape of mouse gut endoderm development
Data explorer | Raw data 

Single-cell RNA-seq dataset of CD34+ cells from human bone marrow
Processed data and meta data | Raw data

Cytof data of mouse thymic development
 FCS files