Code for fitting an ultra-sparse variational Bayes spike regression model, with applications to Genome-wide association studies (vBsr) is here. WARNING: Code is in an early release form (version 0.0.1), and details of the model are forthcoming.
Code for approximate power calculations for identification of gene x gene and gene x environment interactions in genomewide association studies using a two-stage analysis. Download the package powerGWASinteraction from CRAN.
Code for SNP-Haplotype Adaptive Regression (SHARE) to perform multi-locus analysis in order to account for LD patterns observed in human genome developed by James Dai is available in the package SHARE from CRAN.
Software for hare, heft, lspec, logspline, polyclass and polymars, as well as the logspline version discussed in Stone et al (1997) are now available as an R-package. You can download the package polspline from CRAN. (Version 1.0.11, 5/24/2005.)
Software for logspline as well as the logspline version discussed in Stone et al (1997) are now available as an R-package. You can download the package logspline from CRAN. (Version 2,9,2, 4/18/2005.) The latest version of logspline is always part of the latest version of polspline.