Structural Databases and On-Line Programs
- RCSB (PDB) Macromolecular Structures
- PDB SUM (alternative structural database w/ links; Janet Thornton)
- Molecules R Us (NIH)
- Image database of Biological Macromolecules (IMB Jena)
- NCBI Structural Biology
- Nucleic acids database
- Cambridge Crystallographic Database
- Protein Side Chain Database
- The DALI Server (Search for structural homologues)
- UCLA-DOE Structural and Molecular Biology Server
- Biological Macromolecule Crystallization Database
- Protein Data Bank Structure Validation Server
- Crystallographic Twinning Analysis Server (Yeates, UCLA)
- WhatCheck analysis of PDB entries
- MATRAS (3D structure superposition and comparison)
- META PP (Single interface to structure prediction servers)
- RNA World Website (IMB Jena)
- ExPASy Molecular Biology Server
Crystallography / Crystallographers
- Crystallography 101
- CrystaLinks (UW)
- Kevin Cowtan's Book of Fourier
- Kevin Cowtan's Structure Factor Tutorial
- X-RayView (Rice University Tutorial)
- CrystaLinks - A Crystallographer's Miscellany
- International Union of Crystallographers
- Tom Blundell's Heavy Atom Databank
- Crystool: Generating personalized crystallization matrices
- Anomalous Scatterers (Ethan Merritt, U.W.)
Structural Genomics Initiatives and Centers
- New York Structural Genomics Consortium (Rockefeller, Einstein, Brookhaven et al.: E. coli)
- Joint Çenter for Structural Genomics (Bay Area, SSRL: C. elegans and T. maritima)
- Southern California Consortium (UCLA, Scripps, etc.: Mycobacterium tuberculosis)
- Berkeley Structural Genomics Center (Mycoplasma genitalium and Mycoplasma pneumoniae)
- Midwest Center for Structural Genomics (Argonne, Northwestern, Wash. U. etc: Various prokaryotic targets)
- Northwest Structural Genomics Center (UK, Daresbury: Various prokaryotic targets)
- New Jersey Initiative in Structural Genomics (Rutgers, Princeton)
Molecular Biology Databases, Sequence Searches and Alignments
- Restriction enzyme database (REBASE; New England Biolabs)
- European Bioinformatics Institute (EBI)
- EMBL Molecular Biology Services
- TIGR Microbial Genomics Database
- Similarity Search Engines (Proweb)
- Sanger Center for Molecular Biology
- MultAlin (Multiple Alignments at Toulouse)
- Phylogenetics Resources (Berkeley)
- RNA Gene Arrays (Brown Lab, Stanford)
- Codon Usage Database